563 lines
18 KiB
Cython
563 lines
18 KiB
Cython
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# geos_linestring_from_py was transcribed from shapely.geometry.linestring
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# geos_linearring_from_py was transcribed from shapely.geometry.polygon
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# coordseq_ctypes was transcribed from shapely.coords.CoordinateSequence.ctypes
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#
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# Copyright (c) 2007, Sean C. Gillies
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# Transcription to cython: Copyright (c) 2011, Oliver Tonnhofer
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import ctypes
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import logging
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from shapely.geos import lgeos
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from shapely.geometry import Point, LineString, LinearRing
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from shapely.geometry.base import geom_factory
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from shapely.errors import TopologicalError
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include "../_geos.pxi"
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from libc.stdint cimport uintptr_t
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log = logging.getLogger(__name__)
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try:
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import numpy
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has_numpy = True
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except ImportError:
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log.info("Numpy was not imported, continuing without requires()")
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has_numpy = False
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numpy = None
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cdef inline GEOSGeometry *cast_geom(uintptr_t geom_addr):
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return <GEOSGeometry *>geom_addr
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cdef inline GEOSContextHandle_t cast_handle(uintptr_t handle_addr):
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return <GEOSContextHandle_t>handle_addr
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cdef inline GEOSCoordSequence *cast_seq(uintptr_t handle_addr):
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return <GEOSCoordSequence *>handle_addr
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def destroy(geom):
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GEOSGeom_destroy_r(cast_handle(lgeos.geos_handle), cast_geom(geom))
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def required(ob):
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"""Return an object that meets Shapely requirements for self-owned
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C-continguous data, copying if necessary, or just return the original
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object."""
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if has_numpy and hasattr(ob, '__array_interface__'):
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return numpy.require(ob, numpy.float64, ["C", "OWNDATA"])
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else:
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return ob
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def geos_linestring_from_py(ob, update_geom=None, update_ndim=0):
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cdef double *cp
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cdef GEOSContextHandle_t handle = cast_handle(lgeos.geos_handle)
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cdef GEOSCoordSequence *cs
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cdef GEOSGeometry *g
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cdef double dx, dy, dz
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cdef int i, n, m, sm, sn
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# If a LineString is passed in, just clone it and return
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# If a LinearRing is passed in, clone the coord seq and return a LineString
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if isinstance(ob, LineString):
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g = cast_geom(ob._geom)
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if GEOSHasZ_r(handle, g):
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n = 3
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else:
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n = 2
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if type(ob) == LineString:
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return <uintptr_t>GEOSGeom_clone_r(handle, g), n
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else:
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cs = <GEOSCoordSequence*>GEOSGeom_getCoordSeq_r(handle, g)
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cs = GEOSCoordSeq_clone_r(handle, cs)
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return <uintptr_t>GEOSGeom_createLineString_r(handle, cs), n
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# If numpy is present, we use numpy.require to ensure that we have a
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# C-continguous array that owns its data. View data will be copied.
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ob = required(ob)
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try:
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# From array protocol
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array = ob.__array_interface__
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assert len(array['shape']) == 2
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m = array['shape'][0]
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if m < 2:
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raise ValueError(
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"LineStrings must have at least 2 coordinate tuples")
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try:
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n = array['shape'][1]
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except IndexError:
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raise ValueError(
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"Input %s is the wrong shape for a LineString" % str(ob))
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assert n == 2 or n == 3
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# Make pointer to the coordinate array
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if isinstance(array['data'], ctypes.Array):
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cp = <double *><uintptr_t>ctypes.addressof(array['data'])
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else:
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cp = <double *><uintptr_t>array['data'][0]
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# Use strides to properly index into cp
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# ob[i, j] == cp[sm*i + sn*j]
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# Just to avoid a referenced before assignment warning.
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dx = 0
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if array.get('strides', None):
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sm = array['strides'][0]/sizeof(dx)
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sn = array['strides'][1]/sizeof(dx)
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else:
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sm = n
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sn = 1
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# Create a coordinate sequence
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if update_geom is not None:
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cs = <GEOSCoordSequence*>GEOSGeom_getCoordSeq_r(handle, cast_geom(update_geom))
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if n != update_ndim:
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raise ValueError(
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"Wrong coordinate dimensions; this geometry has dimensions: %d" \
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% update_ndim)
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else:
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cs = GEOSCoordSeq_create_r(handle, <int>m, <int>n)
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# add to coordinate sequence
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for i in xrange(m):
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dx = cp[sm*i]
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dy = cp[sm*i+sn]
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dz = 0
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if n == 3:
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dz = cp[sm*i+2*sn]
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# Because of a bug in the GEOS C API,
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# always set X before Y
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GEOSCoordSeq_setX_r(handle, cs, i, dx)
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GEOSCoordSeq_setY_r(handle, cs, i, dy)
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if n == 3:
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GEOSCoordSeq_setZ_r(handle, cs, i, dz)
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except AttributeError:
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# Fall back on list
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try:
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m = len(ob)
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except TypeError: # Iterators, e.g. Python 3 zip
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ob = list(ob)
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m = len(ob)
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if m == 0:
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return None
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elif m < 2:
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raise ValueError(
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"LineStrings must have at least 2 coordinate tuples")
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if m < 2:
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raise ValueError(
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"LineStrings must have at least 2 coordinate tuples")
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def _coords(o):
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if isinstance(o, Point):
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return o.coords[0]
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else:
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return o
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try:
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n = len(_coords(ob[0]))
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except TypeError:
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raise ValueError(
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"Input %s is the wrong shape for a LineString" % str(ob))
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assert n == 2 or n == 3
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# Create a coordinate sequence
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if update_geom is not None:
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cs = <GEOSCoordSequence*>GEOSGeom_getCoordSeq_r(handle, cast_geom(update_geom))
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if n != update_ndim:
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raise ValueError(
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"Wrong coordinate dimensions; this geometry has dimensions: %d" \
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% update_ndim)
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else:
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cs = GEOSCoordSeq_create_r(handle, <int>m, <int>n)
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# add to coordinate sequence
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for i in xrange(m):
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coords = _coords(ob[i])
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dx = coords[0]
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dy = coords[1]
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dz = 0
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if n == 3:
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if len(coords) != 3:
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raise ValueError("Inconsistent coordinate dimensionality")
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dz = coords[2]
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# Because of a bug in the GEOS C API,
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# always set X before Y
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GEOSCoordSeq_setX_r(handle, cs, i, dx)
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GEOSCoordSeq_setY_r(handle, cs, i, dy)
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if n == 3:
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GEOSCoordSeq_setZ_r(handle, cs, i, dz)
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if update_geom is not None:
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return None
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else:
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g = GEOSGeom_createLineString_r(handle, cs);
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if not g:
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raise ValueError("GEOSGeom_createLineString_r returned a NULL pointer")
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return <uintptr_t>g, n
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def geos_linearring_from_py(ob, update_geom=None, update_ndim=0):
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cdef double *cp
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cdef GEOSContextHandle_t handle = cast_handle(lgeos.geos_handle)
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cdef GEOSGeometry *g
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cdef GEOSCoordSequence *cs
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cdef double dx, dy, dz
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cdef unsigned int m
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cdef int i, n, M, sm, sn
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# If a LinearRing is passed in, just clone it and return
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# If a valid LineString is passed in, clone the coord seq and return a LinearRing
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if isinstance(ob, LineString):
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g = cast_geom(ob._geom)
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if GEOSHasZ_r(handle, g):
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n = 3
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else:
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n = 2
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if type(ob) == LinearRing:
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return <uintptr_t>GEOSGeom_clone_r(handle, g), n
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else:
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cs = <GEOSCoordSequence*>GEOSGeom_getCoordSeq_r(handle, g)
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GEOSCoordSeq_getSize_r(handle, cs, &m)
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if not GEOSisValid_r(handle, g):
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raise TopologicalError("A LineString must be valid.")
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elif GEOSisClosed_r(handle, g) and m >= 4:
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cs = GEOSCoordSeq_clone_r(handle, cs)
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return <uintptr_t>GEOSGeom_createLinearRing_r(handle, cs), n
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# else continue below.
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# If numpy is present, we use numpy.require to ensure that we have a
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# C-continguous array that owns its data. View data will be copied.
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ob = required(ob)
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try:
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# From array protocol
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array = ob.__array_interface__
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assert len(array['shape']) == 2
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m = array['shape'][0]
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n = array['shape'][1]
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if m < 3:
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raise ValueError(
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"A LinearRing must have at least 3 coordinate tuples")
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assert n == 2 or n == 3
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# Make pointer to the coordinate array
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if isinstance(array['data'], ctypes.Array):
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cp = <double *><uintptr_t>ctypes.addressof(array['data'])
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else:
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cp = <double *><uintptr_t>array['data'][0]
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# Use strides to properly index into cp
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# ob[i, j] == cp[sm*i + sn*j]
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dx = 0 # Just to avoid a referenced before assignment warning.
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if array.get('strides', None):
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sm = array['strides'][0]/sizeof(dx)
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sn = array['strides'][1]/sizeof(dx)
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else:
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sm = n
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sn = 1
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# Add closing coordinates to sequence?
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# Check whether the first set of coordinates matches the last.
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# If not, we'll have to close the ring later
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if (cp[0] != cp[sm*(m-1)] or cp[sn] != cp[sm*(m-1)+sn] or
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(n == 3 and cp[2*sn] != cp[sm*(m-1)+2*sn]) or
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m == 3):
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M = m + 1
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else:
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M = m
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# Create a coordinate sequence
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if update_geom is not None:
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cs = <GEOSCoordSequence*>GEOSGeom_getCoordSeq_r(handle, cast_geom(update_geom))
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if n != update_ndim:
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raise ValueError(
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"Wrong coordinate dimensions; this geometry has dimensions: %d" \
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% update_ndim)
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else:
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cs = GEOSCoordSeq_create_r(handle, M, n)
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# add to coordinate sequence
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for i in xrange(m):
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dx = cp[sm*i]
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dy = cp[sm*i+sn]
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dz = 0
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if n == 3:
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dz = cp[sm*i+2*sn]
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# Because of a bug in the GEOS C API,
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# always set X before Y
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GEOSCoordSeq_setX_r(handle, cs, i, dx)
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GEOSCoordSeq_setY_r(handle, cs, i, dy)
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if n == 3:
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GEOSCoordSeq_setZ_r(handle, cs, i, dz)
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# Add closing coordinates to sequence?
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if M > m:
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dx = cp[0]
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dy = cp[sn]
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dz = 0
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if n == 3:
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dz = cp[2*sn]
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# Because of a bug in the GEOS C API,
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# always set X before Y
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GEOSCoordSeq_setX_r(handle, cs, M-1, dx)
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GEOSCoordSeq_setY_r(handle, cs, M-1, dy)
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if n == 3:
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GEOSCoordSeq_setZ_r(handle, cs, M-1, dz)
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except AttributeError:
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# Fall back on list
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try:
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m = len(ob)
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except TypeError: # Iterators, e.g. Python 3 zip
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ob = list(ob)
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m = len(ob)
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if m == 0:
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return None
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def _coords(o):
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if isinstance(o, Point):
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return o.coords[0]
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else:
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return o
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n = len(_coords(ob[0]))
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if m < 3:
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raise ValueError(
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"A LinearRing must have at least 3 coordinate tuples")
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assert (n == 2 or n == 3)
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# Add closing coordinates if not provided
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if (
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m == 3
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or _coords(ob[0])[0] != _coords(ob[-1])[0]
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or _coords(ob[0])[1] != _coords(ob[-1])[1]
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):
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M = m + 1
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else:
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M = m
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# Create a coordinate sequence
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if update_geom is not None:
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cs = <GEOSCoordSequence*>GEOSGeom_getCoordSeq_r(handle, cast_geom(update_geom))
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if n != update_ndim:
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raise ValueError(
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"Wrong coordinate dimensions; this geometry has dimensions: %d" \
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% update_ndim)
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else:
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cs = GEOSCoordSeq_create_r(handle, M, n)
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# add to coordinate sequence
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for i in xrange(m):
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coords = _coords(ob[i])
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dx = coords[0]
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dy = coords[1]
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dz = 0
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if n == 3:
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dz = coords[2]
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# Because of a bug in the GEOS C API,
|
||
|
|
# always set X before Y
|
||
|
|
GEOSCoordSeq_setX_r(handle, cs, i, dx)
|
||
|
|
GEOSCoordSeq_setY_r(handle, cs, i, dy)
|
||
|
|
if n == 3:
|
||
|
|
GEOSCoordSeq_setZ_r(handle, cs, i, dz)
|
||
|
|
|
||
|
|
# Add closing coordinates to sequence?
|
||
|
|
if M > m:
|
||
|
|
coords = _coords(ob[0])
|
||
|
|
dx = coords[0]
|
||
|
|
dy = coords[1]
|
||
|
|
dz = 0
|
||
|
|
if n == 3:
|
||
|
|
dz = coords[2]
|
||
|
|
|
||
|
|
# Because of a bug in the GEOS C API,
|
||
|
|
# always set X before Y
|
||
|
|
GEOSCoordSeq_setX_r(handle, cs, M-1, dx)
|
||
|
|
GEOSCoordSeq_setY_r(handle, cs, M-1, dy)
|
||
|
|
if n == 3:
|
||
|
|
GEOSCoordSeq_setZ_r(handle, cs, M-1, dz)
|
||
|
|
|
||
|
|
if update_geom is not None:
|
||
|
|
return None
|
||
|
|
else:
|
||
|
|
g = GEOSGeom_createLinearRing_r(handle, cs)
|
||
|
|
if not g:
|
||
|
|
raise ValueError("GEOSGeom_createLinearRing_r returned a NULL pointer")
|
||
|
|
return <uintptr_t>g, n
|
||
|
|
|
||
|
|
|
||
|
|
def coordseq_ctypes(self):
|
||
|
|
cdef int i, n, m
|
||
|
|
cdef double temp = 0
|
||
|
|
cdef GEOSContextHandle_t handle = cast_handle(lgeos.geos_handle)
|
||
|
|
cdef GEOSCoordSequence *cs
|
||
|
|
cdef double *data_p
|
||
|
|
self._update()
|
||
|
|
n = self._ndim
|
||
|
|
m = self.__len__()
|
||
|
|
array_type = ctypes.c_double * (m * n)
|
||
|
|
data = array_type()
|
||
|
|
|
||
|
|
cs = cast_seq(self._cseq)
|
||
|
|
data_p = <double *><uintptr_t>ctypes.addressof(data)
|
||
|
|
|
||
|
|
for i in xrange(m):
|
||
|
|
GEOSCoordSeq_getX_r(handle, cs, i, &temp)
|
||
|
|
data_p[n*i] = temp
|
||
|
|
GEOSCoordSeq_getY_r(handle, cs, i, &temp)
|
||
|
|
data_p[n*i+1] = temp
|
||
|
|
if n == 3: # TODO: use hasz
|
||
|
|
GEOSCoordSeq_getZ_r(handle, cs, i, &temp)
|
||
|
|
data_p[n*i+2] = temp
|
||
|
|
return data
|
||
|
|
|
||
|
|
def coordseq_iter(self):
|
||
|
|
cdef int i
|
||
|
|
cdef double dx
|
||
|
|
cdef double dy
|
||
|
|
cdef double dz
|
||
|
|
cdef int has_z
|
||
|
|
|
||
|
|
self._update()
|
||
|
|
|
||
|
|
cdef GEOSContextHandle_t handle = cast_handle(lgeos.geos_handle)
|
||
|
|
cdef GEOSCoordSequence *cs
|
||
|
|
cs = cast_seq(self._cseq)
|
||
|
|
|
||
|
|
has_z = self._ndim == 3
|
||
|
|
for i in range(self.__len__()):
|
||
|
|
GEOSCoordSeq_getX_r(handle, cs, i, &dx)
|
||
|
|
GEOSCoordSeq_getY_r(handle, cs, i, &dy)
|
||
|
|
if has_z == 1:
|
||
|
|
GEOSCoordSeq_getZ_r(handle, cs, i, &dz)
|
||
|
|
yield (dx, dy, dz)
|
||
|
|
else:
|
||
|
|
yield (dx, dy)
|
||
|
|
|
||
|
|
cdef GEOSCoordSequence* transform(GEOSCoordSequence* cs,
|
||
|
|
int ndim,
|
||
|
|
double a,
|
||
|
|
double b,
|
||
|
|
double c,
|
||
|
|
double d,
|
||
|
|
double e,
|
||
|
|
double f,
|
||
|
|
double g,
|
||
|
|
double h,
|
||
|
|
double i,
|
||
|
|
double xoff,
|
||
|
|
double yoff,
|
||
|
|
double zoff):
|
||
|
|
"""Performs an affine transformation on a GEOSCoordSequence
|
||
|
|
|
||
|
|
Returns the transformed coordinate sequence
|
||
|
|
"""
|
||
|
|
cdef GEOSContextHandle_t handle = cast_handle(lgeos.geos_handle)
|
||
|
|
cdef unsigned int m
|
||
|
|
cdef GEOSCoordSequence *cs_t
|
||
|
|
cdef double x, y, z
|
||
|
|
cdef double x_t, y_t, z_t
|
||
|
|
|
||
|
|
# create a new coordinate sequence with the same size and dimensions
|
||
|
|
GEOSCoordSeq_getSize_r(handle, cs, &m)
|
||
|
|
cs_t = GEOSCoordSeq_create_r(handle, m, ndim)
|
||
|
|
|
||
|
|
# perform the transform
|
||
|
|
if ndim == 2:
|
||
|
|
for n in range(0, m):
|
||
|
|
GEOSCoordSeq_getX_r(handle, cs, n, &x)
|
||
|
|
GEOSCoordSeq_getY_r(handle, cs, n, &y)
|
||
|
|
x_t = a * x + b * y + xoff
|
||
|
|
y_t = d * x + e * y + yoff
|
||
|
|
GEOSCoordSeq_setX_r(handle, cs_t, n, x_t)
|
||
|
|
GEOSCoordSeq_setY_r(handle, cs_t, n, y_t)
|
||
|
|
if ndim == 3:
|
||
|
|
for n in range(0, m):
|
||
|
|
GEOSCoordSeq_getX_r(handle, cs, n, &x)
|
||
|
|
GEOSCoordSeq_getY_r(handle, cs, n, &y)
|
||
|
|
GEOSCoordSeq_getZ_r(handle, cs, n, &z)
|
||
|
|
x_t = a * x + b * y + c * z + xoff
|
||
|
|
y_t = d * x + e * y + f * z + yoff
|
||
|
|
z_t = g * x + h * y + i * z + zoff
|
||
|
|
GEOSCoordSeq_setX_r(handle, cs_t, n, x_t)
|
||
|
|
GEOSCoordSeq_setY_r(handle, cs_t, n, y_t)
|
||
|
|
GEOSCoordSeq_setZ_r(handle, cs_t, n, z_t)
|
||
|
|
|
||
|
|
return cs_t
|
||
|
|
|
||
|
|
cpdef affine_transform(geom, matrix):
|
||
|
|
cdef double a, b, c, d, e, f, g, h, i, xoff, yoff, zoff
|
||
|
|
if geom.is_empty:
|
||
|
|
return geom
|
||
|
|
if len(matrix) == 6:
|
||
|
|
ndim = 2
|
||
|
|
a, b, d, e, xoff, yoff = matrix
|
||
|
|
if geom.has_z:
|
||
|
|
ndim = 3
|
||
|
|
i = 1.0
|
||
|
|
c = f = g = h = zoff = 0.0
|
||
|
|
matrix = a, b, c, d, e, f, g, h, i, xoff, yoff, zoff
|
||
|
|
elif len(matrix) == 12:
|
||
|
|
ndim = 3
|
||
|
|
a, b, c, d, e, f, g, h, i, xoff, yoff, zoff = matrix
|
||
|
|
if not geom.has_z:
|
||
|
|
ndim = 2
|
||
|
|
matrix = a, b, d, e, xoff, yoff
|
||
|
|
else:
|
||
|
|
raise ValueError("'matrix' expects either 6 or 12 coefficients")
|
||
|
|
|
||
|
|
cdef GEOSContextHandle_t handle = cast_handle(lgeos.geos_handle)
|
||
|
|
cdef GEOSCoordSequence *cs
|
||
|
|
cdef GEOSCoordSequence *cs_t
|
||
|
|
cdef GEOSGeometry *the_geom
|
||
|
|
cdef GEOSGeometry *the_geom_t
|
||
|
|
cdef int m, n
|
||
|
|
cdef double x, y, z
|
||
|
|
cdef double x_t, y_t, z_t
|
||
|
|
|
||
|
|
# Process coordinates from each supported geometry type
|
||
|
|
if geom.type in ('Point', 'LineString', 'LinearRing'):
|
||
|
|
the_geom = cast_geom(geom._geom)
|
||
|
|
cs = <GEOSCoordSequence*>GEOSGeom_getCoordSeq_r(handle, the_geom)
|
||
|
|
|
||
|
|
# perform the transformation
|
||
|
|
cs_t = transform(cs, ndim, a, b, c, d, e, f, g, h, i, xoff, yoff, zoff)
|
||
|
|
|
||
|
|
# create a new geometry from the coordinate sequence
|
||
|
|
if geom.type == 'Point':
|
||
|
|
the_geom_t = GEOSGeom_createPoint_r(handle, cs_t)
|
||
|
|
elif geom.type == 'LineString':
|
||
|
|
the_geom_t = GEOSGeom_createLineString_r(handle, cs_t)
|
||
|
|
elif geom.type == 'LinearRing':
|
||
|
|
the_geom_t = GEOSGeom_createLinearRing_r(handle, cs_t)
|
||
|
|
|
||
|
|
# return the geometry as a Python object
|
||
|
|
return geom_factory(<uintptr_t>the_geom_t)
|
||
|
|
elif geom.type == 'Polygon':
|
||
|
|
ring = geom.exterior
|
||
|
|
shell = affine_transform(ring, matrix)
|
||
|
|
holes = list(geom.interiors)
|
||
|
|
for pos, ring in enumerate(holes):
|
||
|
|
holes[pos] = affine_transform(ring, matrix)
|
||
|
|
return type(geom)(shell, holes)
|
||
|
|
elif geom.type.startswith('Multi') or geom.type == 'GeometryCollection':
|
||
|
|
return type(geom)([affine_transform(part, matrix) for part in geom.geoms])
|
||
|
|
else:
|
||
|
|
raise ValueError('Type %r not recognized' % geom.type)
|